It's possible to create a completely blank check-in (in 1.3.2)

C:\test>svn co file:///c:/svn/trunk .
A b.txt
A a.txt
Checked out revision 30.

C:\test>svn rm file:///c:/svn/trunk/b.txt -m "Deleted on server side."

Committed revision 31.

C:\test>svn rm b.txt
D b.txt

C:\test>svn ci -m "Deleted on client side."
Deleting b.txt

Committed revision 32.

C:\test>svn log -r 32:31 -v file:///c:/svn/
------------------------------------------------------------------------
r32 | Tom | 2006-09-09 02:40:05 +0100 (Sat, 09 Sep 2006) | 1 line
Changed paths:

Deleted on client side.
------------------------------------------------------------------------
r31 | Tom | 2006-09-09 02:39:52 +0100 (Sat, 09 Sep 2006) | 1 line
Changed paths:
   D /trunk/b.txt

Deleted on server side.
------------------------------------------------------------------------

C:\test>svn di -r 31:32 file:///c:/svn/

C:\test>

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Received on Sat Sep 9 03:48:51 2006